HHsearch alignment for GI: 254780694 and conserved domain: PRK05602
>PRK05602 RNA polymerase sigma factor; Reviewed.
Probab=98.18 E-value=4.8e-06 Score=57.69 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8889779999999-985999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 127 ~~Lp~~~R~v~~L~~~~g~s~~EIA~~l~is~~tVk~~l~RAr~~Lr 173 (186)
T PRK05602 127 AALPERQREAIVLQYYQGLSNIEAARVMGLSVDALESLLARARRALR 173 (186)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 75998788999999863899999999989399999999999999999