HHsearch alignment for GI: 254780694 and conserved domain: PRK05602

>PRK05602 RNA polymerase sigma factor; Reviewed.
Probab=98.18  E-value=4.8e-06  Score=57.69  Aligned_cols=46  Identities=22%  Similarity=0.319  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8889779999999-985999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       127 ~~Lp~~~R~v~~L~~~~g~s~~EIA~~l~is~~tVk~~l~RAr~~Lr  173 (186)
T PRK05602        127 AALPERQREAIVLQYYQGLSNIEAARVMGLSVDALESLLARARRALR  173 (186)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             75998788999999863899999999989399999999999999999