HHsearch alignment for GI: 254780694 and conserved domain: PRK05657

>PRK05657 RNA polymerase sigma factor RpoS; Validated.
Probab=96.43  E-value=0.0093  Score=36.58  Aligned_cols=50  Identities=24%  Similarity=0.374  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf             88897799999999-----859997999999499988999999999998079988
Q gi|254780694|r  184 FELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR  233 (246)
Q Consensus       184 ~~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R  233 (246)
T Consensus       264 ~~L~~REr~II~~RfGL~~~e~~TL~EIg~~lgvSRERVRQIE~~AL~KLR~~l~  318 (328)
T PRK05657        264 FELNDKQREVIERRFGLNGYEAATLEEVAREIGLTRERVRQIQVEALRRLREILQ  318 (328)
T ss_pred             HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             0699999999999808899896059999989697999999999999999879999