HHsearch alignment for GI: 254780694 and conserved domain: PRK05657
>PRK05657 RNA polymerase sigma factor RpoS; Validated.
Probab=96.43 E-value=0.0093 Score=36.58 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 88897799999999-----859997999999499988999999999998079988
Q gi|254780694|r 184 FELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 (246)
Q Consensus 184 ~~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R 233 (246)
T Consensus 264 ~~L~~REr~II~~RfGL~~~e~~TL~EIg~~lgvSRERVRQIE~~AL~KLR~~l~ 318 (328)
T PRK05657 264 FELNDKQREVIERRFGLNGYEAATLEEVAREIGLTRERVRQIQVEALRRLREILQ 318 (328)
T ss_pred HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 0699999999999808899896059999989697999999999999999879999