HHsearch alignment for GI: 254780694 and conserved domain: PRK05901

>PRK05901 RNA polymerase sigma factor; Provisional.
Probab=96.59  E-value=0.008  Score=36.97  Aligned_cols=53  Identities=28%  Similarity=0.426  Sum_probs=47.6

Q ss_pred             CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             8897799999999-----8599979999994999889999999999980799889999
Q gi|254780694|r  185 ELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI  237 (246)
Q Consensus       185 ~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav  237 (246)
T Consensus       335 ~L~~REr~Ii~~RyGL~~~~~~TL~eIg~~lgvSrERVRQIE~kAL~KLR~~~~~~~l  392 (398)
T PRK05901        335 TLSEREAGVIRMRFGLTDGQPKTLDEIGQVYGVTRERIRQIESKTMRKLRHPSRSQVL  392 (398)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             8999999999997589998960399999897969999999999999996783788799