HHsearch alignment for GI: 254780694 and conserved domain: PRK05911
>PRK05911 RNA polymerase sigma factor sigma-28; Reviewed.
Probab=96.92 E-value=0.0023 Score=40.40 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8889779999999-985999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 204 ~~L~erEr~Ii~lry~e~~Tl~EIg~~lgvS~eRVrQi~~~AL~kLR 250 (257)
T PRK05911 204 LALEEKERKVMALYYYEELVLKEIGKILGVSESRVSQIHSKALLKLR 250 (257)
T ss_pred HCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 65899999999987489878999998979889999999999999999