HHsearch alignment for GI: 254780694 and conserved domain: PRK05911

>PRK05911 RNA polymerase sigma factor sigma-28; Reviewed.
Probab=96.92  E-value=0.0023  Score=40.40  Aligned_cols=46  Identities=24%  Similarity=0.303  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8889779999999-985999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       204 ~~L~erEr~Ii~lry~e~~Tl~EIg~~lgvS~eRVrQi~~~AL~kLR  250 (257)
T PRK05911        204 LALEEKERKVMALYYYEELVLKEIGKILGVSESRVSQIHSKALLKLR  250 (257)
T ss_pred             HCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             65899999999987489878999998979889999999999999999