HHsearch alignment for GI: 254780694 and conserved domain: PRK05949
>PRK05949 RNA polymerase sigma factor; Validated.
Probab=96.47 E-value=0.0091 Score=36.63 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 888977999999998-----599979999994999889999999999980799
Q gi|254780694|r 184 FELTGREVECLTWIS-----EGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 184 ~~LT~RE~eVl~lia-----~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~ 231 (246)
T Consensus 265 ~~L~~REr~Ii~~RfGl~~~~~~TL~EIg~~lgiSrERVRQIE~rAL~KLR~~ 317 (327)
T PRK05949 265 AELTPQQREVLTLRFGLEDGKELSLAKVGQRLNLSRERVRQLEHQALAHLRRR 317 (327)
T ss_pred HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 56999999999997189996985799999998959999999999999998625