HHsearch alignment for GI: 254780694 and conserved domain: PRK05949

>PRK05949 RNA polymerase sigma factor; Validated.
Probab=96.47  E-value=0.0091  Score=36.63  Aligned_cols=48  Identities=21%  Similarity=0.199  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             888977999999998-----599979999994999889999999999980799
Q gi|254780694|r  184 FELTGREVECLTWIS-----EGKTSDEIAVILGISRNTVNNYIASIMRKTATK  231 (246)
Q Consensus       184 ~~LT~RE~eVl~lia-----~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~  231 (246)
T Consensus       265 ~~L~~REr~Ii~~RfGl~~~~~~TL~EIg~~lgiSrERVRQIE~rAL~KLR~~  317 (327)
T PRK05949        265 AELTPQQREVLTLRFGLEDGKELSLAKVGQRLNLSRERVRQLEHQALAHLRRR  317 (327)
T ss_pred             HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf             56999999999997189996985799999998959999999999999998625