HHsearch alignment for GI: 254780694 and conserved domain: PRK06986

>PRK06986 fliA flagellar biosynthesis sigma factor; Validated.

Probab=97.06  E-value=0.0015  Score=41.74  Aligned_cols=45  Identities=24%  Similarity=0.369  Sum_probs=41.1

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8897799999999-85999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       183 ~L~~rEr~Ii~l~y~~~~tl~eIa~~lgiS~eRVrQie~~AL~kLR  228 (234)
T PRK06986        183 KLPEREQLVLSLYYDEELNLKEIGAVLGVSESRVSQIHSQAIKRLR  228 (234)
T ss_pred             HCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             0999999999987389989999999979789999999999999999