HHsearch alignment for GI: 254780694 and conserved domain: PRK07408
>PRK07408 RNA polymerase sigma factor SigF; Reviewed.
Probab=97.33 E-value=0.00068 Score=43.86 Aligned_cols=46 Identities=28% Similarity=0.299 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 202 ~~L~eREr~Il~~ry~~~~tl~EIa~~lgvS~~rVsqi~~~AL~kLR 248 (256)
T PRK07408 202 AQLEERTREVLEFVFLHDLTQKEAAERLGISPVTVSRRVKKGLQQLK 248 (256)
T ss_pred HCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 56999999999999637998999998979899999999999999999