HHsearch alignment for GI: 254780694 and conserved domain: PRK07598
>PRK07598 RNA polymerase sigma factor SigC; Validated.
Probab=96.58 E-value=0.011 Score=36.10 Aligned_cols=54 Identities=26% Similarity=0.309 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 8897799999999-----85999799999949998899999999999807998899999
Q gi|254780694|r 185 ELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 (246)
Q Consensus 185 ~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~ 238 (246)
T Consensus 345 ~L~~REr~IL~lRfGL~dg~~~TL~EIG~~lgISRERVRQIE~kAL~KLR~p~r~~~Lr 403 (410)
T PRK07598 345 DLTSRERDVIRMRFGLADGRTYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRNRIR 403 (410)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 69999999999964899979668999998979699999999999999967737789999