HHsearch alignment for GI: 254780694 and conserved domain: PRK08583

>PRK08583 RNA polymerase sigma factor SigB; Validated.

Probab=97.35  E-value=0.00059  Score=44.25  Aligned_cols=46  Identities=24%  Similarity=0.234  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       204 ~~L~erEr~Ii~lry~~~~t~~eIa~~lGiS~eRVrQi~~~Al~kLR  250 (257)
T PRK08583        204 PVLSDREKSIIQCTFIENLSQKETGERLGISQMHVSRLQRQAIKKLR  250 (257)
T ss_pred             HCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             54999999999999579999999999989699999999999999987