HHsearch alignment for GI: 254780694 and conserved domain: PRK09390
>PRK09390 fixJ response regulator FixJ; Provisional.
Probab=99.89 E-value=1.2e-22 Score=164.28 Aligned_cols=201 Identities=15% Similarity=0.106 Sum_probs=128.0
Q ss_pred HHEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHH
Q ss_conf 11000221445888876553023213799997327999999999999987193023000266631112321000689589
Q gi|254780694|r 6 QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85 (246)
Q Consensus 6 ~~~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (246)
T Consensus 2 ~k~tIliVDDh~~vr~gl~~lL~~~~~~--v~~~~~~~~~l~~~----~-----------~~~pdlvllDi~mP~~~G~e 64 (202)
T PRK09390 2 TKGVVHVVDDDEAMRDSLAFLLDSAGFE--VRLFESAQAFLDAL----P-----------GLRFGCVVTDVRMPGIDGIE 64 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCE--EEEECCHHHHHHHH----H-----------CCCCCEEEECCCCCCCCCHH
T ss_conf 9997999849999999999999988998--99989999999997----6-----------57979998779999989607
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999966984517389999852324430325433332144571475033736899999997178754698999999999
Q gi|254780694|r 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 (246)
Q Consensus 86 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (246)
T Consensus 65 ~l~~l~~~~p~--~~v------ivlT~~~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~~~~~~~~~~~~----- 131 (202)
T PRK09390 65 LLRRLKARGSP--LPV------IVMTGHGDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALAQAPAAAKSEAV----- 131 (202)
T ss_pred HHHHHHHCCCC--CCE------EEEEECCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH-----
T ss_conf 99998722899--867------99974574888899998294644559999999999999999715232421466-----
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 99999754201467798888897799999999859997999999499988999999999998079988999999997589
Q gi|254780694|r 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 (246)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gl 245 (246)
T Consensus 132 ~----------~~~~~~~~~LT~RE~eVL~ll~~G~snkeIA~~L~iS~~TV~~h~~~I~~KL~v~~~~elv~~A~~~Gl 201 (202)
T PRK09390 132 A----------ADIRARIASLSERERQVMDGLVAGLSNKVIARDLDISPRTVEVYRANVMTKMQAGSLSELVRMALRAGA 201 (202)
T ss_pred H----------HHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 7----------888740066998999999999838968999999798788999999999999688988999999998599
Q ss_pred C
Q ss_conf 8
Q gi|254780694|r 246 V 246 (246)
Q Consensus 246 i 246 (246)
T Consensus 202 l 202 (202)
T PRK09390 202 L 202 (202)
T ss_pred C
T ss_conf 9