HHsearch alignment for GI: 254780694 and conserved domain: PRK09415

>PRK09415 RNA polymerase factor sigma C; Reviewed.

Probab=97.94  E-value=2.7e-05  Score=52.87  Aligned_cols=45  Identities=20%  Similarity=0.213  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             889779999999-985999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       127 ~L~~~~r~ii~l~~~~~~s~~EIA~~l~is~~tV~~rl~Rark~Lr  172 (177)
T PRK09415        127 SLPIKYREVIYLFYYEELSIKEIATVTGVNENTIKTRLKKAKELLK  172 (177)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             6999999999999980998999999889299999999999999999