HHsearch alignment for GI: 254780694 and conserved domain: PRK09635
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional.
Probab=96.53 E-value=0.0072 Score=37.30 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 88897799999999-85999799999949998899999999999807998
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~ 232 (246)
T Consensus 117 e~L~P~eRaa~vLrdvfg~~~~EIA~~Lg~s~~a~Rqll~RAR~~l~~~~ 166 (290)
T PRK09635 117 ERLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESR 166 (290)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 62998685455269860898899999968998999999999999873238