HHsearch alignment for GI: 254780694 and conserved domain: PRK09636
>PRK09636 RNA polymerase sigma factor SigJ; Provisional.
Probab=97.22 E-value=0.00085 Score=43.23 Aligned_cols=49 Identities=20% Similarity=0.144 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 88897799999999-85999799999949998899999999999807998
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~ 232 (246)
T Consensus 110 ~~L~p~qRav~vLrdv~g~s~~EIA~iLg~s~~avR~~l~RAR~~l~~~~ 159 (289)
T PRK09636 110 ERLSPLERAAFLLHDVFGVPFDEIASTLGRSEAACRQLASRARKHVRAAR 159 (289)
T ss_pred HHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 73999896254049860999999999981799999999999999873448