HHsearch alignment for GI: 254780694 and conserved domain: PRK09636

>PRK09636 RNA polymerase sigma factor SigJ; Provisional.
Probab=97.22  E-value=0.00085  Score=43.23  Aligned_cols=49  Identities=20%  Similarity=0.144  Sum_probs=43.7

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             88897799999999-85999799999949998899999999999807998
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT  232 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~  232 (246)
T Consensus       110 ~~L~p~qRav~vLrdv~g~s~~EIA~iLg~s~~avR~~l~RAR~~l~~~~  159 (289)
T PRK09636        110 ERLSPLERAAFLLHDVFGVPFDEIASTLGRSEAACRQLASRARKHVRAAR  159 (289)
T ss_pred             HHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             73999896254049860999999999981799999999999999873448