HHsearch alignment for GI: 254780694 and conserved domain: PRK09638

>PRK09638 RNA polymerase sigma factor SigY; Reviewed.

Probab=98.18  E-value=4.9e-06  Score=57.64  Aligned_cols=46  Identities=26%  Similarity=0.270  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       126 ~~Lp~~~r~v~~L~~~eg~s~~EIA~~l~is~~tVk~~l~rA~~~Lr  172 (177)
T PRK09638        126 MKLPPELRAPFILKHYYGYTYEEIAKMLGIPEGTVKSRVHHGLKKIR  172 (177)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             75999898999999991999999999989399999999999999999