HHsearch alignment for GI: 254780694 and conserved domain: PRK09643

>PRK09643 RNA polymerase sigma factor SigM; Reviewed.
Probab=98.10  E-value=8.8e-06  Score=55.98  Aligned_cols=46  Identities=22%  Similarity=0.216  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8889779999999-985999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       130 ~~Lp~~~R~vl~L~~~eg~s~~EIA~~lgis~~tVKsrl~RAr~~Lr  176 (197)
T PRK09643        130 MRLPVEQRAALVAVDMQGYSVADTARMLGVAEGTVKSRCARGRARLA  176 (197)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             76999887999999981999999999989399999999999999999