HHsearch alignment for GI: 254780694 and conserved domain: PRK09643
>PRK09643 RNA polymerase sigma factor SigM; Reviewed.
Probab=98.10 E-value=8.8e-06 Score=55.98 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8889779999999-985999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 130 ~~Lp~~~R~vl~L~~~eg~s~~EIA~~lgis~~tVKsrl~RAr~~Lr 176 (197)
T PRK09643 130 MRLPVEQRAALVAVDMQGYSVADTARMLGVAEGTVKSRCARGRARLA 176 (197)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 76999887999999981999999999989399999999999999999