HHsearch alignment for GI: 254780694 and conserved domain: PRK09645
>PRK09645 RNA polymerase sigma factor SigL; Provisional.
Probab=98.21 E-value=3.8e-06 Score=58.31 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 115 ~~L~~~~r~v~~l~~~~g~s~~EIA~~l~is~~tVk~~l~ra~~~Lr 161 (171)
T PRK09645 115 AQLSPEHRAVLVRSYYRGWSTAQIAADLGIPEGTVKSRLHYAVRALR 161 (171)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 75999988798999986999999999989299999999999999999