HHsearch alignment for GI: 254780694 and conserved domain: PRK09646

>PRK09646 RNA polymerase sigma factor SigK; Reviewed.

Probab=98.29  E-value=1.8e-06  Score=60.46  Aligned_cols=45  Identities=27%  Similarity=0.259  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             88897799999999-8599979999994999889999999999980
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKT  228 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  228 (246)
T Consensus       141 ~~Lp~~~R~vi~L~~~~g~s~~EIA~~Lgis~~TVk~rl~rA~~~L  186 (194)
T PRK09646        141 DALTDTQREAITLAYYGGLTYREVAERLAVPLGTVKTRMRDGLRRL  186 (194)
T ss_pred             HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             8678157899999999399999999998919999999999999999