HHsearch alignment for GI: 254780694 and conserved domain: PRK09648
>PRK09648 RNA polymerase sigma factor SigD; Reviewed.
Probab=98.06 E-value=1.2e-05 Score=55.16 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 136 ~~Lp~~~R~vl~L~~~~g~s~~EIA~~lg~s~~tVk~~l~RA~~~Lr 182 (187)
T PRK09648 136 EILPEKQREILILRVVVGLSAEETAEAVGSTPGAVRVAQHRALSRLR 182 (187)
T ss_pred HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 83999999999999984999999999989399999999999999999