HHsearch alignment for GI: 254780694 and conserved domain: PRK09648

>PRK09648 RNA polymerase sigma factor SigD; Reviewed.
Probab=98.06  E-value=1.2e-05  Score=55.16  Aligned_cols=46  Identities=17%  Similarity=0.138  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       136 ~~Lp~~~R~vl~L~~~~g~s~~EIA~~lg~s~~tVk~~l~RA~~~Lr  182 (187)
T PRK09648        136 EILPEKQREILILRVVVGLSAEETAEAVGSTPGAVRVAQHRALSRLR  182 (187)
T ss_pred             HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             83999999999999984999999999989399999999999999999