HHsearch alignment for GI: 254780694 and conserved domain: PRK09652
>PRK09652 RNA polymerase sigma factor RpoE; Provisional.
Probab=98.19 E-value=4.3e-06 Score=58.00 Aligned_cols=46 Identities=26% Similarity=0.202 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 136 ~~L~~~~r~v~~l~~~~~~s~~EIA~~lgis~~tVk~~l~Ra~~~Lr 182 (192)
T PRK09652 136 ESLPEELRTAITLREIEGLSYEEIAEIMGCPIGTVRSRIFRAREALR 182 (192)
T ss_pred HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 83999999888899972999999999989399999999999999999