HHsearch alignment for GI: 254780694 and conserved domain: PRK09652

>PRK09652 RNA polymerase sigma factor RpoE; Provisional.
Probab=98.19  E-value=4.3e-06  Score=58.00  Aligned_cols=46  Identities=26%  Similarity=0.202  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       136 ~~L~~~~r~v~~l~~~~~~s~~EIA~~lgis~~tVk~~l~Ra~~~Lr  182 (192)
T PRK09652        136 ESLPEELRTAITLREIEGLSYEEIAEIMGCPIGTVRSRIFRAREALR  182 (192)
T ss_pred             HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             83999999888899972999999999989399999999999999999