HHsearch alignment for GI: 254780694 and conserved domain: PRK09836
>PRK09836 DNA-binding transcriptional activator CusR; Provisional.
Probab=96.93 E-value=0.00096 Score=42.90 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=71.2
Q ss_pred CHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 254333321445714750337368999999971787546-9899999999999999754201467798888897799999
Q gi|254780694|r 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 (246)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl 194 (246)
T Consensus 84 ~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr~~~~~~~~~~~-~~---~l~~d~~~~~v~~~g~~v~LT~~E~~lL 159 (226)
T PRK09836 84 IEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVIIESQFQ-VA---DLMVDLVSRKVTRSGTRITLTSKEFTLL 159 (226)
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEE-EC---CEEEECCCEEEEECCEEEECCHHHHHHH
T ss_conf 8899999976996886368767999999999966266667765079-87---7998514118988999985688999999
Q ss_pred HHHHCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCC
Q ss_conf 999859----99799999949-----99889999999999980799
Q gi|254780694|r 195 TWISEG----KTSDEIAVILG-----ISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 195 ~lia~G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLgv~ 231 (246)
T Consensus 160 ~~L~~~~g~vvsre~l~~~vw~~~~~~~~~~vdv~I~rLR~Kl~~~ 205 (226)
T PRK09836 160 EFFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDND 205 (226)
T ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9998689964879999999628887888588999999999985788