HHsearch alignment for GI: 254780694 and conserved domain: PRK09836

>PRK09836 DNA-binding transcriptional activator CusR; Provisional.
Probab=96.93  E-value=0.00096  Score=42.90  Aligned_cols=112  Identities=13%  Similarity=0.174  Sum_probs=71.2

Q ss_pred             CHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             254333321445714750337368999999971787546-9899999999999999754201467798888897799999
Q gi|254780694|r  116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL  194 (246)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl  194 (246)
T Consensus        84 ~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr~~~~~~~~~~~-~~---~l~~d~~~~~v~~~g~~v~LT~~E~~lL  159 (226)
T PRK09836         84 IEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVIIESQFQ-VA---DLMVDLVSRKVTRSGTRITLTSKEFTLL  159 (226)
T ss_pred             HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEE-EC---CEEEECCCEEEEECCEEEECCHHHHHHH
T ss_conf             8899999976996886368767999999999966266667765079-87---7998514118988999985688999999


Q ss_pred             HHHHCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCC
Q ss_conf             999859----99799999949-----99889999999999980799
Q gi|254780694|r  195 TWISEG----KTSDEIAVILG-----ISRNTVNNYIASIMRKTATK  231 (246)
Q Consensus       195 ~lia~G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLgv~  231 (246)
T Consensus       160 ~~L~~~~g~vvsre~l~~~vw~~~~~~~~~~vdv~I~rLR~Kl~~~  205 (226)
T PRK09836        160 EFFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDND  205 (226)
T ss_pred             HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             9998689964879999999628887888588999999999985788