HHsearch alignment for GI: 254780694 and conserved domain: PRK09935
>PRK09935 transcriptional regulator FimZ; Provisional.
Probab=99.93 E-value=2.3e-24 Score=175.23 Aligned_cols=210 Identities=16% Similarity=0.140 Sum_probs=140.5
Q ss_pred HHHEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCH
Q ss_conf 01100022144588887655302321379999732799999999999998719302300026663111232100068958
Q gi|254780694|r 5 IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84 (246)
Q Consensus 5 ~~~~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (246)
T Consensus 1 M~p~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~----~~-----------~DvvllD~~lp~~~g~ 65 (210)
T PRK09935 1 MKPASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRT----YP-----------VDLVILDIELPGTDGF 65 (210)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHH----CC-----------CCEEEECCCCCCCCCC
T ss_conf 99788999859699999999999629892899998999999999974----79-----------9999988999998864
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99999996698451738999985232443032543333214457147503373689999999717875469899999999
Q gi|254780694|r 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 (246)
Q Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (246)
T Consensus 66 ~~i~~i~~~~-----p~~~i---lvls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~-- 135 (210)
T PRK09935 66 TLLKRIKQIQ-----ETVKV---LFLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILSGYSFFPSETLNFI-- 135 (210)
T ss_pred CHHHHHHHHC-----CCCCE---EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHH--
T ss_conf 0567898738-----99708---9971767299999999668776886789999999999999859953698999998--
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 99999975420146779888889779999999985999799999949998899999999999807998899999999758
Q gi|254780694|r 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
T Consensus 136 -----~~~--~~~~~~~~~~~Lt~RE~eVL~ll~~G~snkeIA~~L~iS~~TV~~h~~~I~~KL~v~nr~elv~~A~~~~ 208 (210)
T PRK09935 136 -----KSN--KCSKGSSTDMPLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKSNIYGKLGLHSIVELIDYAKSHE 208 (210)
T ss_pred -----HHC--CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf -----734--3666655678999899999999986999999998949889999999999999819999999999999859
Q ss_pred CC
Q ss_conf 98
Q gi|254780694|r 245 IV 246 (246)
Q Consensus 245 li 246 (246)
T Consensus 209 Li 210 (210)
T PRK09935 209 LL 210 (210)
T ss_pred CC
T ss_conf 99