HHsearch alignment for GI: 254780694 and conserved domain: PRK10046
>PRK10046 dpiA two-component response regulator DpiA; Provisional.
Probab=97.35 E-value=0.001 Score=42.65 Aligned_cols=189 Identities=10% Similarity=0.032 Sum_probs=93.7
Q ss_pred HEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHH
Q ss_conf 10002214458888765530232137999973279999999999999871930230002666311123210006895899
Q gi|254780694|r 7 QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86 (246)
Q Consensus 7 ~~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (246)
T Consensus 4 ~i~VLIVEDd~~v~~~l~~~L~~~~gf~~V~~A~~~~eA~~~l~---------------~~~pDLvLLDi~LPd~~Glel 68 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE---------------RFKPGLILLDNYLPDGRGINL 68 (225)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH---------------HCCCCEEEEECCCCCCCHHHH
T ss_conf 88699995989999999999972899549999899999999997---------------359999998289899979999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCC------CCCCHHHHH
Q ss_conf 99999669845173899998523244303254333321445714750337368999999971787------546989999
Q gi|254780694|r 87 VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG------RIILRDRLW 160 (246)
Q Consensus 87 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 160 (246)
T Consensus 69 l~~lr~~~~~~--~V------I~iTA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~L~~y~~~~~~l~~~~~~~Q~~iD 140 (225)
T PRK10046 69 LHELVQAHYPG--DV------VFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQID 140 (225)
T ss_pred HHHHHHHCCCC--CE------EEEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 99999648799--88------99968999999999997499831028999999999999999999986357768999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCH----HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999999754201467798888897----7999999998599979999994999889999999999
Q gi|254780694|r 161 EIGLLAAYQANMFKSYDVHWGKDFELTG----REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 (246)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~LT~----RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~ 225 (246)
T Consensus 141 ~~~-------~~~~~~~~~~~lpKGl~~~Tl~~v~~~l~~~~~~~ta~eva~~~giSrvTaRRYLe~L~ 202 (225)
T PRK10046 141 EMF-------NAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTTARRYLEYCA 202 (225)
T ss_pred HHH-------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 996-------23356888565899999899999999997179986899999985851999999999998