HHsearch alignment for GI: 254780694 and conserved domain: PRK10643
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional.
Probab=97.07 E-value=0.0015 Score=41.72 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=68.0
Q ss_pred HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 54333321445714750337368999999971787546989999999999999975420146779888889779999999
Q gi|254780694|r 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 (246)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~l 196 (246)
T Consensus 85 ~~~~~~l~~GAddyi~KP~~~~eL~ari~~~lrr~~~~~~~~~~----~~~~~~d~~~~~~~~~~~~i~LT~~E~~lL~~ 160 (222)
T PRK10643 85 EDRIAGLDVGADDYLVKPFALEELHARIRALLRRHNNQGESELQ----VGNLTLNLGRQQVWLDGQELILTPKEYALLSR 160 (222)
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEE----ECCEEECCCCCEEEECCEEEEECHHHHHHHHH
T ss_conf 88999997599776438876899999999997032366777326----77689810006898899888708799999999
Q ss_pred HHCC----CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
Q ss_conf 9859----9979999994-----99988999999999998079
Q gi|254780694|r 197 ISEG----KTSDEIAVIL-----GISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 197 ia~G----~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLgv 230 (246)
T Consensus 161 L~~~~g~vvsre~L~~~v~~~~~~~~~~~ld~~I~rLRkKl~~ 203 (222)
T PRK10643 161 LMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGK 203 (222)
T ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 9967999868999999960878888867699999999976699