HHsearch alignment for GI: 254780694 and conserved domain: PRK10651
>PRK10651 transcriptional regulator NarL; Provisional.
Probab=99.91 E-value=2.5e-23 Score=168.60 Aligned_cols=211 Identities=14% Similarity=0.066 Sum_probs=131.8
Q ss_pred HHHEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCH
Q ss_conf 01100022144588887655302321379999732799999999999998719302300026663111232100068958
Q gi|254780694|r 5 IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84 (246)
Q Consensus 5 ~~~~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (246)
T Consensus 4 ~~pirVlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~ea~~~~~----~~~pDlvll-----------Dl~lp~~~G~ 68 (216)
T PRK10651 4 QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE----SLDPDLILL-----------DLNMPGMNGL 68 (216)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHH----HCCCCEEEE-----------ECCCCCCCCC
T ss_conf 9997899983999999999999975899389999899999999987----079999999-----------5999998887
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99999996698451738999985232443032543333214457147503373689999999717875469899999999
Q gi|254780694|r 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164 (246)
Q Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (246)
T Consensus 69 ~~~~~l~~~-----~~~~~i---ivlt~~~~~~~~~~al~~Ga~gyl~K~~~~~~L~~ai~~v~~g~~~~~~~~~~~l~- 139 (216)
T PRK10651 69 ETLDKLREK-----SLSGRI---VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA- 139 (216)
T ss_pred CCCCCCCCC-----CCCCCE---EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH-
T ss_conf 642323345-----788746---76305541889999996698789837899999999999998599716988999999-
Q ss_pred HHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 99999975420-14677988888977999999998599979999994999889999999999980799889999999975
Q gi|254780694|r 165 LAAYQANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 (246)
Q Consensus 165 ~~~~~~~~~~~-~~~~~~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~ 243 (246)
T Consensus 140 --~----~~~~~~~~~~~~~~~LT~RE~eVL~ll~~G~snkeIA~~L~iS~~TV~~h~~~i~~KLgv~nr~ea~~~a~~~ 213 (216)
T PRK10651 140 --A----SLRANRATTERDVNQLTPRERDILKLIAQGLSNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213 (216)
T ss_pred --H----HHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf --8----7522666544442348989999999998599999999996978999999999999984899999999999983
Q ss_pred CC
Q ss_conf 89
Q gi|254780694|r 244 NI 245 (246)
Q Consensus 244 Gl 245 (246)
T Consensus 214 ~l 215 (216)
T PRK10651 214 RI 215 (216)
T ss_pred CC
T ss_conf 69