HHsearch alignment for GI: 254780694 and conserved domain: PRK10701
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional.
Probab=96.61 E-value=0.0015 Score=41.61 Aligned_cols=115 Identities=16% Similarity=0.058 Sum_probs=68.1
Q ss_pred HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHH--HHHHH-----HHCCCCCCCCCCCCH
Q ss_conf 54333321445714750337368999999971787546989-99999999999--99754-----201467798888897
Q gi|254780694|r 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLLAAY--QANMF-----KSYDVHWGKDFELTG 188 (246)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~LT~ 188 (246)
T Consensus 85 ~d~v~gl~~GADDYl~KPf~~~eL~aRi~a~lrr~~~~~~~~~~~~~~~~~~~~~~~g~l~ld~~~~~v~~~g~~i~LT~ 164 (240)
T PRK10701 85 MNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATQAKGLQETSLTPYKALHFGTLTIDPINRVVTLAGEEISLST 164 (240)
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEEECCH
T ss_conf 88999997688776417998799999999999653254443222345557664389877999888899999999987678
Q ss_pred HHHHHHHHHHCC----CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCC
Q ss_conf 799999999859----9979999994-----999889999999999980799
Q gi|254780694|r 189 REVECLTWISEG----KTSDEIAVIL-----GISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 189 RE~eVl~lia~G----~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLgv~ 231 (246)
T Consensus 165 ~E~~lL~~L~~~~g~vvsre~L~~~vwg~~~~~~~rtvdv~I~rLRkKl~~~ 216 (240)
T PRK10701 165 ADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDN 216 (240)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999779987389999998539887888678999999999987528