HHsearch alignment for GI: 254780694 and conserved domain: PRK10766
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional.
Probab=96.66 E-value=0.0017 Score=41.38 Aligned_cols=113 Identities=15% Similarity=0.136 Sum_probs=65.0
Q ss_pred HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCH------HHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 433332144571475033736899999997178754698------9999--99999999997542014677988888977
Q gi|254780694|r 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR------DRLW--EIGLLAAYQANMFKSYDVHWGKDFELTGR 189 (246)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~LT~R 189 (246)
T Consensus 87 ~~i~al~~GaddYl~KPf~~~eL~ari~allrR~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~i~LT~~ 166 (224)
T PRK10766 87 DRIVGLEMGADDYVTKPFELRELLVRVKNLLWRISLARQAQAVAEQPETQDNCYRFAGYCLNVNRRTLERNGEPIKLTKA 166 (224)
T ss_pred HHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEEECCHH
T ss_conf 99999984941451399988999999999972524421121123466777876999999998888899989999867899
Q ss_pred HHHHHHHHHCC----CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
Q ss_conf 99999999859----9979999994-----99988999999999998079
Q gi|254780694|r 190 EVECLTWISEG----KTSDEIAVIL-----GISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 190 E~eVl~lia~G----~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLgv 230 (246)
T Consensus 167 E~~lL~~L~~~~g~vvsre~L~~~vw~~~~~~~~~sid~~I~rLRkKl~~ 216 (224)
T PRK10766 167 EYELLVAFVTNPGQVLSRERLLRMLSHRVEDPNDRTIDVLIRRLRHKLNP 216 (224)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999967997396999999964888788847299999999976798