HHsearch alignment for GI: 254780694 and conserved domain: PRK10816
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional.
Probab=96.58 E-value=0.0017 Score=41.29 Aligned_cols=111 Identities=11% Similarity=0.170 Sum_probs=71.9
Q ss_pred HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 54333321445714750337368999999971787546989999999999999975420146779888889779999999
Q gi|254780694|r 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 (246)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~l 196 (246)
T Consensus 85 ~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr~~~~~~~~~~----~~~~~~d~~~~~~~~~g~~i~LT~~E~~LL~~ 160 (223)
T PRK10816 85 QDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVIS----LPPFQVDLSRRELSINDEVIKLTAFEYTIMET 160 (223)
T ss_pred HHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEE----ECCEEEEHHHCEEEECCEEEEECHHHHHHHHH
T ss_conf 78999998699886418977789999999996655578776188----78868711005898799899706899999999
Q ss_pred HHCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCC
Q ss_conf 9859----99799999949-----99889999999999980799
Q gi|254780694|r 197 ISEG----KTSDEIAVILG-----ISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 197 ia~G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLgv~ 231 (246)
T Consensus 161 L~~~~~~vvsre~l~~~vw~~~~~~~~~sld~~I~rLRkKl~~~ 204 (223)
T PRK10816 161 LIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQ 204 (223)
T ss_pred HHHCCCEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99879923839999998549987888677999999999974335