HHsearch alignment for GI: 254780694 and conserved domain: PRK11083
>PRK11083 DNA-binding response regulator CreB; Provisional.
Probab=96.71 E-value=0.0019 Score=40.95 Aligned_cols=199 Identities=12% Similarity=0.059 Sum_probs=97.5
Q ss_pred HHHEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCH
Q ss_conf 01100022144588887655302321379999732799999999999998719302300026663111232100068958
Q gi|254780694|r 5 IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84 (246)
Q Consensus 5 ~~~~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (246)
T Consensus 1 M~~~kILiVEDd~~l~~~l~~~L~~~g~--~v~~~~~~~~al~~~~----~~-----------~~DlvilDi~LP~~~G~ 63 (229)
T PRK11083 1 MQQPTILLVEDEQAIADTLVYALQSEGF--TVEWFERGLPALDKLR----QQ-----------PPDLVILDVGLPDISGF 63 (229)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCC--EEEEECCHHHHHHHHH----HC-----------CCCEEEECCCCCCCCHH
T ss_conf 9999999996999999999999998899--9999899999999997----18-----------99899973889998768
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCC--HHHHHHH
Q ss_conf 99999996698451738999985232443032543333214457147503373689999999717875469--8999999
Q gi|254780694|r 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL--RDRLWEI 162 (246)
Q Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 162 (246)
T Consensus 64 ~l~~~iR~~~--~~~pII------~lta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrR~~~~~~~~~~~~~~ 135 (229)
T PRK11083 64 ELCRQLRAFH--PALPVI------FLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVKKFAAPSPVIRIA 135 (229)
T ss_pred HHHHHHHHHC--CCCEEE------EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 8999999708--997299------98367898999999975998773087428999999999997643567777632564
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999754201467798888897799999999859----99799999949-----99889999999999980799
Q gi|254780694|r 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG----KTSDEIAVILG-----ISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~lia~G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLgv~ 231 (246)
T Consensus 136 ~---~~~ld~~~~~v~~~g~~i~LT~~E~~LL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~rtidv~I~rLR~KL~~~ 210 (229)
T PRK11083 136 G---HFELDEPGARISYFGTPLSLTRYEFLLLKTLLLSPGRVFSRQQLMDIVWEDAQDSYDRTVDTHIKTLRAKLRAI 210 (229)
T ss_pred C---CEEEECCCCEEEECCEECCCCHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 7---88998786199999995459999999999998679940969999998559988888466999999999987526