HHsearch alignment for GI: 254780694 and conserved domain: PRK11173
>PRK11173 two-component response regulator; Provisional.
Probab=95.57 E-value=0.053 Score=31.74 Aligned_cols=112 Identities=15% Similarity=0.188 Sum_probs=64.2
Q ss_pred HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHH----HH--HHCCCCCCCCCCCCHH
Q ss_conf 433332144571475033736899999997178--754698999999999999997----54--2014677988888977
Q gi|254780694|r 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQAN----MF--KSYDVHWGKDFELTGR 189 (246)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~LT~R 189 (246)
T Consensus 88 ~~i~~l~~GaddYi~KPf~~~EL~arv~~~l~r~~~~~~~~~~~~~~---~~~~~~~~~ld~~~~~l~~~~g~~i~Lt~~ 164 (237)
T PRK11173 88 DKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSV---ESYKFNGWELDINSRSLISPDGEQYKLPRS 164 (237)
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CEEEECCEEEECCCCEEEECCCEEEECCHH
T ss_conf 89999976976788789887999999999986641356653334665---438988899972684799719979976999
Q ss_pred HHHHHHHHHCC----CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999859----9979999994-----9998899999999999807998
Q gi|254780694|r 190 EVECLTWISEG----KTSDEIAVIL-----GISRNTVNNYIASIMRKTATKT 232 (246)
Q Consensus 190 E~eVl~lia~G----~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLgv~~ 232 (246)
T Consensus 165 E~~lL~~L~~~~~~vvsR~~L~~~vwg~~~~~~~r~ld~~I~rLRkKl~~~~ 216 (237)
T PRK11173 165 EFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTP 216 (237)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999999986799876899999996198878885869999999999765279