HHsearch alignment for GI: 254780694 and conserved domain: PRK11475

>PRK11475 DNA-binding transcriptional activator BglJ; Provisional.
Probab=99.73  E-value=1.6e-17  Score=131.35  Aligned_cols=104  Identities=17%  Similarity=0.094  Sum_probs=79.1

Q ss_pred             HHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             32144571475033736899999997178754698999999999999997542014677988888977999999998599
Q gi|254780694|r  122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK  201 (246)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~lia~G~  201 (246)
T Consensus        87 L~~aga~Gyl~K~~~~~eL~~Ai~~~~~g~~~~~~---------------~~~~~~-~~~~~~~Lt~rE~eVl~l~a~G~  150 (205)
T PRK11475         87 LSPSPLDGVLSKASTLEILQQELFLSLNGVRQATD---------------RLNNQW-YINQSRMLSPTEREILRFMSRGY  150 (205)
T ss_pred             HHHHHCCEEEECCCCHHHHHHHHHHHHCCCHHHCH---------------HHHCCC-CCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             99841668885678899999999998706113134---------------665345-67767889858999999997699


Q ss_pred             CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             9799999949998899999999999807998899999999
Q gi|254780694|r  202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV  241 (246)
Q Consensus       202 t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~  241 (246)
T Consensus       151 s~~eIA~~L~~S~kTv~thr~~~m~KLgv~s~a~Li~~a~  190 (205)
T PRK11475        151 SMPQIAEQLERNIKTIRAHKFNVMSKLGVSSDAGLLDAAD  190 (205)
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             9999999978888899999999999829998799999999