HHsearch alignment for GI: 254780694 and conserved domain: PRK11475
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional.
Probab=99.73 E-value=1.6e-17 Score=131.35 Aligned_cols=104 Identities=17% Similarity=0.094 Sum_probs=79.1
Q ss_pred HHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 32144571475033736899999997178754698999999999999997542014677988888977999999998599
Q gi|254780694|r 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201 (246)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~lia~G~ 201 (246)
T Consensus 87 L~~aga~Gyl~K~~~~~eL~~Ai~~~~~g~~~~~~---------------~~~~~~-~~~~~~~Lt~rE~eVl~l~a~G~ 150 (205)
T PRK11475 87 LSPSPLDGVLSKASTLEILQQELFLSLNGVRQATD---------------RLNNQW-YINQSRMLSPTEREILRFMSRGY 150 (205)
T ss_pred HHHHHCCEEEECCCCHHHHHHHHHHHHCCCHHHCH---------------HHHCCC-CCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99841668885678899999999998706113134---------------665345-67767889858999999997699
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9799999949998899999999999807998899999999
Q gi|254780694|r 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241 (246)
Q Consensus 202 t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~ 241 (246)
T Consensus 151 s~~eIA~~L~~S~kTv~thr~~~m~KLgv~s~a~Li~~a~ 190 (205)
T PRK11475 151 SMPQIAEQLERNIKTIRAHKFNVMSKLGVSSDAGLLDAAD 190 (205)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9999999978888899999999999829998799999999