HHsearch alignment for GI: 254780694 and conserved domain: PRK11924
>PRK11924 RNA polymerase sigma factor; Provisional.
Probab=98.04 E-value=1.2e-05 Score=55.03 Aligned_cols=46 Identities=26% Similarity=0.260 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 124 ~~L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~l~Ra~~~Lr 170 (180)
T PRK11924 124 DALPEKQREVFLLRYVEGLSYQEIADQLGVPLGTVKSRLRRARQKLR 170 (180)
T ss_pred HHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 85999999999999996859999999989499999999999999999