HHsearch alignment for GI: 254780694 and conserved domain: PRK11924

>PRK11924 RNA polymerase sigma factor; Provisional.
Probab=98.04  E-value=1.2e-05  Score=55.03  Aligned_cols=46  Identities=26%  Similarity=0.260  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       124 ~~L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~l~Ra~~~Lr  170 (180)
T PRK11924        124 DALPEKQREVFLLRYVEGLSYQEIADQLGVPLGTVKSRLRRARQKLR  170 (180)
T ss_pred             HHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             85999999999999996859999999989499999999999999999