HHsearch alignment for GI: 254780694 and conserved domain: PRK12515

>PRK12515 RNA polymerase sigma factor; Provisional.
Probab=98.07  E-value=1.2e-05  Score=55.17  Aligned_cols=58  Identities=21%  Similarity=0.192  Sum_probs=48.9

Q ss_pred             CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf             8889779999999-9859997999999499988999999999998079988999999997589
Q gi|254780694|r  184 FELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI  245 (246)
Q Consensus       184 ~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gl  245 (246)
T Consensus       130 ~~L~~~~R~vi~l~~~e~~s~~EIA~~lgis~~tV~~~l~RAr~~L----r~~L~~~g~~~g~  188 (189)
T PRK12515        130 AKLSPAHREIIDLVYYHEKSVEEVGEIVGIPESTVKTRMFYARKKL----AELLKAAGVERGW  188 (189)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----HHHHHHHCCCCCC
T ss_conf             7599999999999998499999999998929999999999999999----9999972833589