HHsearch alignment for GI: 254780694 and conserved domain: PRK12515
>PRK12515 RNA polymerase sigma factor; Provisional.
Probab=98.07 E-value=1.2e-05 Score=55.17 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 8889779999999-9859997999999499988999999999998079988999999997589
Q gi|254780694|r 184 FELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 (246)
Q Consensus 184 ~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gl 245 (246)
T Consensus 130 ~~L~~~~R~vi~l~~~e~~s~~EIA~~lgis~~tV~~~l~RAr~~L----r~~L~~~g~~~g~ 188 (189)
T PRK12515 130 AKLSPAHREIIDLVYYHEKSVEEVGEIVGIPESTVKTRMFYARKKL----AELLKAAGVERGW 188 (189)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----HHHHHHHCCCCCC
T ss_conf 7599999999999998499999999998929999999999999999----9999972833589