HHsearch alignment for GI: 254780694 and conserved domain: PRK12516
>PRK12516 RNA polymerase sigma factor; Provisional.
Probab=98.14 E-value=6.4e-06 Score=56.85 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 889779999999-985999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 119 ~Lp~~~R~vl~L~~~egls~~EIAe~Lgis~~TVksrl~RAr~~Lr 164 (190)
T PRK12516 119 QLPDDQREAIILIGASGFAYEEAAEICGCAVGTIKSRVSRARARLQ 164 (190)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 1999998999989982999999999989499999999999999999