HHsearch alignment for GI: 254780694 and conserved domain: PRK12516

>PRK12516 RNA polymerase sigma factor; Provisional.
Probab=98.14  E-value=6.4e-06  Score=56.85  Aligned_cols=45  Identities=18%  Similarity=0.230  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             889779999999-985999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       119 ~Lp~~~R~vl~L~~~egls~~EIAe~Lgis~~TVksrl~RAr~~Lr  164 (190)
T PRK12516        119 QLPDDQREAIILIGASGFAYEEAAEICGCAVGTIKSRVSRARARLQ  164 (190)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             1999998999989982999999999989499999999999999999