HHsearch alignment for GI: 254780694 and conserved domain: PRK12522

>PRK12522 RNA polymerase sigma factor; Provisional.

Probab=98.04  E-value=1.4e-05  Score=54.67  Aligned_cols=46  Identities=20%  Similarity=0.138  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             888977999999998-5999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~lia-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       118 ~~L~~~~R~vi~L~~~~~~s~~EIA~~l~is~~tVksrl~rAr~~Lr  164 (173)
T PRK12522        118 QLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAKKQMR  164 (173)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             81999999999999983999999999989399999999999999999