HHsearch alignment for GI: 254780694 and conserved domain: PRK12523
>PRK12523 RNA polymerase sigma factor; Reviewed.
Probab=98.38 E-value=9.4e-07 Score=62.22 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8889779999999-985999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 118 ~~Lp~~~R~v~~L~~~eGls~~EIA~~LgiS~~tVk~~l~rAl~~~~ 164 (172)
T PRK12523 118 GKLSSKARAAFLYNRLDGMGHAEIAERLGVSVSRVRQYLAQGLRQCY 164 (172)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 64999999999999993999999999989399999999999999999