HHsearch alignment for GI: 254780694 and conserved domain: PRK12524

>PRK12524 RNA polymerase sigma factor; Provisional.

Probab=98.15  E-value=6.3e-06  Score=56.90  Aligned_cols=46  Identities=26%  Similarity=0.273  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       135 ~~Lp~~~R~vi~L~~~eg~s~~EIA~~lgis~~tVk~~l~Rark~Lr  181 (196)
T PRK12524        135 AALPERQRQAVVLRHIEGLSNPEIAEVMQIGVEAVESLTARGKRALA  181 (196)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             85999999998999980899999999989299999999999999999