HHsearch alignment for GI: 254780694 and conserved domain: PRK12528

>PRK12528 RNA polymerase sigma factor; Provisional.
Probab=98.10  E-value=7.9e-06  Score=56.28  Aligned_cols=44  Identities=27%  Similarity=0.246  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             8889779999999-9859997999999499988999999999998
Q gi|254780694|r  184 FELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRK  227 (246)
Q Consensus       184 ~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~K  227 (246)
T Consensus       118 ~~LP~~~R~vf~L~r~~gls~~EIA~~LgiS~~tVk~~l~rA~~~  162 (167)
T PRK12528        118 DGLPPLVKRAFLLAQVDGLGYGEIATELGISLATVKRYLNKAAMR  162 (167)
T ss_pred             HCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             709999999999999829899999999797999999999999999