HHsearch alignment for GI: 254780694 and conserved domain: PRK12529

>PRK12529 RNA polymerase sigma factor; Provisional.
Probab=98.22  E-value=3.4e-06  Score=58.65  Aligned_cols=44  Identities=25%  Similarity=0.268  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             88897799999999-859997999999499988999999999998
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRK  227 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~K  227 (246)
T Consensus       126 ~~Lp~r~R~vF~L~r~eGls~~EIAe~LgiS~~tV~~~l~rAl~~  170 (178)
T PRK12529        126 DTLRPRVKQAFLMATLDGMKQKDIAQALDIALPTVKKYIHQAYVT  170 (178)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             569978889987998829999999999895999999999999999