HHsearch alignment for GI: 254780694 and conserved domain: PRK12530
>PRK12530 RNA polymerase sigma factor; Provisional.
Probab=97.79 E-value=6.8e-05 Score=50.27 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8897799999999-85999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 136 ~LP~~~R~v~~Lr~~~~ls~~EIA~~l~is~~tVksrL~RAR~~Lr 181 (191)
T PRK12530 136 KLPAQQARVFMMREFLELSSEQICQECHITTSNLHVLLYRARLQLQ 181 (191)
T ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 6999999999999992999999999989699999999999999999