HHsearch alignment for GI: 254780694 and conserved domain: PRK12530

>PRK12530 RNA polymerase sigma factor; Provisional.
Probab=97.79  E-value=6.8e-05  Score=50.27  Aligned_cols=45  Identities=9%  Similarity=0.059  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8897799999999-85999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       136 ~LP~~~R~v~~Lr~~~~ls~~EIA~~l~is~~tVksrL~RAR~~Lr  181 (191)
T PRK12530        136 KLPAQQARVFMMREFLELSSEQICQECHITTSNLHVLLYRARLQLQ  181 (191)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             6999999999999992999999999989699999999999999999