HHsearch alignment for GI: 254780694 and conserved domain: PRK12531
>PRK12531 RNA polymerase sigma factor; Provisional.
Probab=98.05 E-value=1.3e-05 Score=54.93 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=41.2
Q ss_pred CCCHHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88977999999-9985999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLT-WISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~-lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 141 ~Lp~~~R~vi~L~~~e~~s~~EIAe~l~is~~TVKsrl~rA~k~LR 186 (194)
T PRK12531 141 RLPKAQRDVLQAVYLEELPHQQVAEMFDIPLGTVKSRLRLAVEKLR 186 (194)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 6999999999999886999999999989299999999999999999