HHsearch alignment for GI: 254780694 and conserved domain: PRK12531

>PRK12531 RNA polymerase sigma factor; Provisional.
Probab=98.05  E-value=1.3e-05  Score=54.93  Aligned_cols=45  Identities=18%  Similarity=0.196  Sum_probs=41.2

Q ss_pred             CCCHHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88977999999-9985999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLT-WISEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~-lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       141 ~Lp~~~R~vi~L~~~e~~s~~EIAe~l~is~~TVKsrl~rA~k~LR  186 (194)
T PRK12531        141 RLPKAQRDVLQAVYLEELPHQQVAEMFDIPLGTVKSRLRLAVEKLR  186 (194)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             6999999999999886999999999989299999999999999999