HHsearch alignment for GI: 254780694 and conserved domain: PRK12532

>PRK12532 RNA polymerase sigma factor; Provisional.
Probab=97.84  E-value=4.8e-05  Score=51.25  Aligned_cols=46  Identities=22%  Similarity=0.271  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       135 ~~Lp~~~R~vl~L~~~egls~~EIA~~lgis~~tVks~l~RAR~~Lr  181 (195)
T PRK12532        135 YNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLR  181 (195)
T ss_pred             HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             85999998999999981999999999989599999999999999999