HHsearch alignment for GI: 254780694 and conserved domain: PRK12532
>PRK12532 RNA polymerase sigma factor; Provisional.
Probab=97.84 E-value=4.8e-05 Score=51.25 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 135 ~~Lp~~~R~vl~L~~~egls~~EIA~~lgis~~tVks~l~RAR~~Lr 181 (195)
T PRK12532 135 YNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLR 181 (195)
T ss_pred HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 85999998999999981999999999989599999999999999999