HHsearch alignment for GI: 254780694 and conserved domain: PRK12533

>PRK12533 RNA polymerase sigma factor; Provisional.

Probab=98.07  E-value=1.1e-05  Score=55.46  Aligned_cols=46  Identities=28%  Similarity=0.205  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       136 ~~Lp~~~R~vl~Lr~~eglS~~EIAeiLgip~gTVKSRL~RAR~~Lr  182 (217)
T PRK12533        136 AKLPVEYREVLVLRELEDMSYREIAAIADVPVGTVMSRLARARRRLA  182 (217)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             80999886899999980999999999989499999999999999999