HHsearch alignment for GI: 254780694 and conserved domain: PRK12543
>PRK12543 RNA polymerase sigma factor; Provisional.
Probab=98.16 E-value=6e-06 Score=57.06 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8897799999999-85999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 129 ~Lp~~~R~vi~L~~~~g~s~~EIA~~l~is~~tVk~rl~rA~k~LR 174 (190)
T PRK12543 129 KLPYKLKQVIILRYLHDYSQEEVAQILHIPIGTVKSRIHAALKKLR 174 (190)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 4999999999999985999999999989399999999999999999