HHsearch alignment for GI: 254780694 and conserved domain: PRK12543

>PRK12543 RNA polymerase sigma factor; Provisional.
Probab=98.16  E-value=6e-06  Score=57.06  Aligned_cols=45  Identities=22%  Similarity=0.251  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8897799999999-85999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       129 ~Lp~~~R~vi~L~~~~g~s~~EIA~~l~is~~tVk~rl~rA~k~LR  174 (190)
T PRK12543        129 KLPYKLKQVIILRYLHDYSQEEVAQILHIPIGTVKSRIHAALKKLR  174 (190)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             4999999999999985999999999989399999999999999999