HHsearch alignment for GI: 254780694 and conserved domain: PRK12545

>PRK12545 RNA polymerase sigma factor; Provisional.

Probab=97.24  E-value=0.00093  Score=42.97  Aligned_cols=45  Identities=11%  Similarity=0.028  Sum_probs=40.4

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8897799999999-85999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       139 ~LP~~~R~v~~Lr~~egls~~EIA~~L~is~~tVksrL~RAR~~LR  184 (201)
T PRK12545        139 HLPEQIGRVFMMREFLDFEIDDICTELTLTANHCSVLLYRARTRLR  184 (201)
T ss_pred             HCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             5999998898999992898999999989699999999999999999