HHsearch alignment for GI: 254780694 and conserved domain: PRK12546
>PRK12546 RNA polymerase sigma factor; Provisional.
Probab=98.02 E-value=1.5e-05 Score=54.51 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8897799999999-85999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 113 ~LP~~~R~vl~L~~~egls~~EIAe~Lgis~gTVKsRL~RAR~~Lr 158 (188)
T PRK12546 113 QLPDEQREALILVGASGFSYEEAAEMCGVAVGTVKSRANRARARLA 158 (188)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 6999998895879982989999999989399999999999999999