HHsearch alignment for GI: 254780694 and conserved domain: PRK12546

>PRK12546 RNA polymerase sigma factor; Provisional.
Probab=98.02  E-value=1.5e-05  Score=54.51  Aligned_cols=45  Identities=22%  Similarity=0.309  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8897799999999-85999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       113 ~LP~~~R~vl~L~~~egls~~EIAe~Lgis~gTVKsRL~RAR~~Lr  158 (188)
T PRK12546        113 QLPDEQREALILVGASGFSYEEAAEMCGVAVGTVKSRANRARARLA  158 (188)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             6999998895879982989999999989399999999999999999