HHsearch alignment for GI: 254780694 and conserved domain: PRK12547

>PRK12547 RNA polymerase sigma factor; Provisional.
Probab=98.09  E-value=9.2e-06  Score=55.86  Aligned_cols=45  Identities=20%  Similarity=0.276  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8897799999999-85999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       112 ~Lp~~~r~v~~L~~~~g~s~~EIA~~lgis~~tVksrl~rAr~~Lr  157 (164)
T PRK12547        112 LLPADQREAIILIGASGFSYEEAAEICGCAVGTIKSRVSRARNRLQ  157 (164)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             5899999999989984999999999989399999999999999999