HHsearch alignment for GI: 254780694 and conserved domain: PRK12547
>PRK12547 RNA polymerase sigma factor; Provisional.
Probab=98.09 E-value=9.2e-06 Score=55.86 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8897799999999-85999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 112 ~Lp~~~r~v~~L~~~~g~s~~EIA~~lgis~~tVksrl~rAr~~Lr 157 (164)
T PRK12547 112 LLPADQREAIILIGASGFSYEEAAEICGCAVGTIKSRVSRARNRLQ 157 (164)
T ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 5899999999989984999999999989399999999999999999