HHsearch alignment for GI: 254780694 and conserved domain: PRK13558

>PRK13558 bacterio-opsin activator; Provisional.

Probab=97.02  E-value=0.0014  Score=41.79  Aligned_cols=44  Identities=18%  Similarity=0.234  Sum_probs=41.0

Q ss_pred             CCCHHHHHHHHHHH--------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             88977999999998--------599979999994999889999999999980
Q gi|254780694|r  185 ELTGREVECLTWIS--------EGKTSDEIAVILGISRNTVNNYIASIMRKT  228 (246)
Q Consensus       185 ~LT~RE~eVl~lia--------~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  228 (246)
T Consensus       616 ~LTDRQ~eaLqtAY~sGyFEwPR~sTGeElAesLgIS~pTfhqHLRaaerKL  667 (674)
T PRK13558        616 DLTDRQLTALQKAYVSGYFEWPRRAEGKQLAESMDIVPSTYHQHLQAAKQKL  667 (674)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             6049899999999864757788778789999870988388999999999999