HHsearch alignment for GI: 254780694 and conserved domain: PRK13719
>PRK13719 conjugal transfer transcriptional regulator TraJ; Provisional.
Probab=96.09 E-value=0.0073 Score=37.23 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 187 T~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
T Consensus 147 ~~~~~~vf~~Ys~G~SH~~ia~~L~It~~sSkn~~s~i~k~~gissrde~l~~l~~s~~~ 206 (220)
T PRK13719 147 TSIQYDVFILYSFGFSHNSIASLLNITNGSSKNKISEILKFFGISSRDELLIILHTSEMI 206 (220)
T ss_pred EEEEEEEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 200466898875242468899884741354077999999972988599999999997689