HHsearch alignment for GI: 254780694 and conserved domain: PRK13870

>PRK13870 transcriptional regulator TraR; Provisional.
Probab=100.00  E-value=4.2e-34  Score=237.78  Aligned_cols=202  Identities=14%  Similarity=0.083  Sum_probs=158.6

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC--
Q ss_conf             279999999999999871930230002666311123210006895899999996698451738999985232443032--
Q gi|254780694|r   39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL--  116 (246)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--  116 (246)
T Consensus        15 ~~de~~~~~~l~~~a~~~gf~~~ayl~~-----~~~~~~~isnYP~eW~~~Y~~~~Y~~iDPVv~~a~~~~~Pf~Ws~~~   89 (234)
T PRK13870         15 EGDECILKTGLADIAEHFGFTGYAYLHI-----QHRHITAVTNYHREWQSTYFDKKFDALDPVVKRARSRKHIFTWSGEQ   89 (234)
T ss_pred             HCCHHHHHHHHHHHHHHCCCCCEEEEEE-----CCCCEEEEECCCHHHHHHHHHCCCEEECHHHHHHHCCCCCEEECCCC
T ss_conf             3539999999999999839985798750-----79975787279999999999888903087999883489897608765


Q ss_pred             -----------HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHH-HHHHH--HHHHHHHHHHHHH--CCCCC
Q ss_conf             -----------54333321445714750337368999999971787546989-99999--9999999975420--14677
Q gi|254780694|r  117 -----------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEI--GLLAAYQANMFKS--YDVHW  180 (246)
Q Consensus       117 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~--~~~~~  180 (246)
T Consensus        90 ~~~~~~~~~r~f~~eA~~~Gl~~G~tiPi~~~~G~~~~lSlas~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~l~~~~~~  168 (234)
T PRK13870         90 ERPSLSKDERAFYAHAADFGIRSGITIPIKTANGSMSMFTLASEK-PVIDLDREIDAVAAAATIGQIHARISFLRTTPTA  168 (234)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             544348689999999998599966999888799998999981399-8421678899999999999999999862048888


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf             988888977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r  181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV  246 (246)
Q Consensus       181 ~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli  246 (246)
T Consensus       169 ~~~~~LT~RE~E~L~W~A~GKT~~EIA~ILgISe~TV~fHl~na~~KL~a~nr~qAVa~Ai~~gLI  234 (234)
T PRK13870        169 EDAAWLDPKEATYLRWIAVGMTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI  234 (234)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf             776679979999999997899899999997988999999999999995899899999999985899