HHsearch alignment for GI: 254780694 and conserved domain: PRK13870
>PRK13870 transcriptional regulator TraR; Provisional.
Probab=100.00 E-value=4.2e-34 Score=237.78 Aligned_cols=202 Identities=14% Similarity=0.083 Sum_probs=158.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC--
Q ss_conf 279999999999999871930230002666311123210006895899999996698451738999985232443032--
Q gi|254780694|r 39 LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-- 116 (246)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-- 116 (246)
T Consensus 15 ~~de~~~~~~l~~~a~~~gf~~~ayl~~-----~~~~~~~isnYP~eW~~~Y~~~~Y~~iDPVv~~a~~~~~Pf~Ws~~~ 89 (234)
T PRK13870 15 EGDECILKTGLADIAEHFGFTGYAYLHI-----QHRHITAVTNYHREWQSTYFDKKFDALDPVVKRARSRKHIFTWSGEQ 89 (234)
T ss_pred HCCHHHHHHHHHHHHHHCCCCCEEEEEE-----CCCCEEEEECCCHHHHHHHHHCCCEEECHHHHHHHCCCCCEEECCCC
T ss_conf 3539999999999999839985798750-----79975787279999999999888903087999883489897608765
Q ss_pred -----------HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHH-HHHHH--HHHHHHHHHHHHH--CCCCC
Q ss_conf -----------54333321445714750337368999999971787546989-99999--9999999975420--14677
Q gi|254780694|r 117 -----------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-RLWEI--GLLAAYQANMFKS--YDVHW 180 (246)
Q Consensus 117 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~--~~~~~ 180 (246)
T Consensus 90 ~~~~~~~~~r~f~~eA~~~Gl~~G~tiPi~~~~G~~~~lSlas~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~l~~~~~~ 168 (234)
T PRK13870 90 ERPSLSKDERAFYAHAADFGIRSGITIPIKTANGSMSMFTLASEK-PVIDLDREIDAVAAAATIGQIHARISFLRTTPTA 168 (234)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 544348689999999998599966999888799998999981399-8421678899999999999999999862048888
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 988888977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 181 ~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
T Consensus 169 ~~~~~LT~RE~E~L~W~A~GKT~~EIA~ILgISe~TV~fHl~na~~KL~a~nr~qAVa~Ai~~gLI 234 (234)
T PRK13870 169 EDAAWLDPKEATYLRWIAVGMTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234 (234)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 776679979999999997899899999997988999999999999995899899999999985899