HHsearch alignment for GI: 254780694 and conserved domain: PRK13919
>PRK13919 putative RNA polymerase sigma E protein; Provisional.
Probab=98.23 E-value=3.5e-06 Score=58.56 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 889779999999-985999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 136 ~L~~~~r~vi~L~~~~g~s~~EIA~~L~is~~TVk~~l~rA~k~Lr 181 (187)
T PRK13919 136 ALSPEERRVIEVLYYQGYTHREAARLLGLPLGTLKTWARRALSKLK 181 (187)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 4999999999999985999999999989399999999999999999